Publications

Explore our community's work in imaging research and stay up to date with the latest advancements in the field.

"Biological age model using explainable automated CT-based cardiometabolic biomarkers for phenotypic prediction of longevity"

Imaging biomarkers can reflect the cumulative macroscopic effects of aging at the tissue and organ levels. Abdominal CT represents an appealing candidate for a more personalized investigation.

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4 months ago
"Ultra-Low Field Neuroimaging in the Young (UNITY) Automating workflows to scale across LMIC sites" at OHBM

Portable low-field MRI has the potential to make a huge impact on MRI access across the world due to its low cost and power needs. See how biomarkers can be autogenerated in biomedical data platforms.

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6 months ago
"Time-to-event modeling for hospital length of stay prediction for COVID-19 patients" in Machine Learning with Applications

Yuxin Wen, Md Fashiar Rahman, Yan Zhuang, Michael Pokojovy, Honglun Xu, Peter McCaffrey, Alexander Vo, Eric Walser, Scott Moen, Tzu-Liang (Bill) Tseng

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6 months ago
"An interpretable multi-task system for clinically applicable COVID-19 diagnosis using CXR" in Journal of X-Ray Science and Technology

Yan Zhuang, Md Fashiar Rahman, Yuxin Wen, Michael Pokojovy, Peter Mccaffrey, Alexander Vo, Eric Walser, Scott Moen, Honglun Xu, Tzu Liang Tseng

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6 months ago
"HeuDiConv — flexible DICOM conversion into structured directory layouts" in The Journal of Open Source Software

Halchenko YO, Goncalves M, Ghosh S, Velasco P, Visconti di Oleggio Castello M, Salo T, Wodder JT 2nd, Hanke M, Sadil P, Gorgolewski KJ, Ioanas HI, Rorden C, Hendrickson TJ, Dayan M, Houlihan SD, et al

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6 months ago
"Why complete medical data curation matters: challenges faced while comparing two deep-learning-based CT segmentation methods" in SPIE

Haoqi Wang, Mia Markey, Nicolas Pannetier, and Mehul Sampat

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6 months ago
"MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline" in Neuroinformatics

Cai LT, Moon J, Camacho PB, Anderson AT, Chwa WJ, Sutton BP, Markowitz AJ, Palacios EM, Rodriguez A, Manley GT, Shankar S, Bremer PT, Mukherjee P, Madduri RK; TRACK-TBI Investigators

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"Generative AI for Rapid Diffusion MRI with Improved Image Quality, Reliability and Generalizability" in arXiv Image and Video Processing

Sadikov, A., Pan, X., Choi, H., Cai, L. T., & Mukherjee, P.

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5 months ago
"Deep Learning Diagnosis and Classification of Rotator Cuff Tears on Shoulder MRI" in Investigative Radiology

Lin, Dana J. MD; Schwier, Michael PhD; Geiger, Bernhard PhD; Raithel, Esther PhD; von Busch, Heinrich PhD; Fritz, Jan MD; Kline, Mitchell MD; Brooks, Michael MD; Dunham, Kevin MD; et al.

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6 months ago
"Diagnosis of Coronavirus Disease 2019 Pneumonia by Using Chest Radiography: Value of Artificial Intelligence" in Radiology

Zhang R, Tie X, Qi Z, Bevins NB, Zhang C, Griner D, Song TK, Nadig JD, Schiebler ML, Garrett JW, Li K, Reeder SB, Chen GH

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6 months ago
"The evolution of white matter microstructural changes after mild traumatic brain injury: A longitudinal DTI and NODDI study" Science Adv.

E. M. Palacios et al.

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6 months ago
"The Case for Optimized Edge-Centric Tractography at Scale" in Frontiers in Neuroinformatics

Moon JY, Mukherjee P, Madduri RK, Markowitz AJ, Cai LT, Palacios EM, Manley GT and Bremer P-T

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6 months ago
"Pathological Computed Tomography Features Associated With Adverse Outcomes After Mild Traumatic Brain Injury: A TRACK-TBI Study" JAMA Neur.

Yuh EL, Jain S, Sun X, et al.

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6 months ago
"A low-field magnetic resonance neuroimaging initiative to characterize neurodevelopment in low and middle-income settings" Dev. Cog. Neur.

F. Abate, A. Adu-Amankwah, KA Ae-Ngibise, F Agbokey, VA Agyemang, CT Agyemang, C. Akgun, J. Ametepe, T. Arichi, KP Asante, S. Balaji, L. Baljer, PJ Basser, J. Beauchemin, C. Bennallick, et. al

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6 months ago
"Reproducible Tract Profiles 2 (RTP2) suite, from diffusion MRI acquisition to clinical practice and research" in Nature Scientific Reports

Lerma-Usabiaga, G., Liu, M., Paz-Alonso, P.M. et al.

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6 months ago
"FlywheelTools: Data Curation and Manipulation on the Flywheel Platform" in Frontiers in Neuroinformatics

Tapera Tinashe M., Cieslak Matthew, Bertolero Max, Adebimpe Azeez, Aguirre Geoffrey K., Butler Ellyn R., Cook Philip A., Davila Diego, Elliott Mark A., Linguiti Sophia, Murtha Kristin, Tackett William

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6 months ago
"White Matter Asymmetry: A Reflection of Pathology in Traumatic Brain Injury" in Journal of Neurotrauma

Vakhtin AA, Zhang Y, Wintermark M, Massaband P, Robinson MT, Ashford JW, Furst AJ

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6 months ago
"Data-science ready, multisite, human diffusion MRI white-matter-tract statistics" in Nature Scientific Data

Lerma-Usabiaga, G., Mukherjee, P., Perry, M.L. et al

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6 months ago
"Replication and generalization in applied neuroimaging" in Neuroimage

Lerma-Usabiaga G, Mukherjee P, Ren Z, Perry ML, Wandell BA.

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